| Monash Cluster Computing | Monash University | About Monash | Faculties | Campuses | Contact Monash |
| MC2 Users | MC2 Groups | Site Map |
| Monash Cluster Computing | Monash University | About Monash | Faculties | Campuses | Contact Monash |
| MC2 Users | MC2 Groups | Site Map |
| Topics in Software web: | Changed: now 18:38 | Changed by: |
| BuildingBleedingEdgeOnClusterUsingEnvVariables | 29 Jan 2008 - 04:55 - r5 | WendyMason |
| Building the Bleeding Edge version of on a Computer Cluster using Environment Variables (and a module) If you need to use a feature in the Bleeding Edge version of ... | ||
| BuildingBleedingEdgeOnClusterUsingModules | 13 Mar 2008 - 06:33 - r9 | WendyMason |
| Building the Bleeding Edge version of on a Computer Cluster using Modules If you need to use a feature in the Bleeding Edge version of on a cluster, that is not ... | ||
| CheatSheet | 23 Apr 2008 - 04:17 - r17 | WendyMason |
| The !CheatSheet page. The aim of this page is to serve as a !CheatSheet for users to either bookmark in their browser or print out and stick on the wall. If you have ... | ||
| CheckingOutExperimentalOnly | 02 Aug 2007 - 00:13 - r6 | PatrickSunter |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| DocumentationLists | 05 Dec 2007 - 03:51 - r9 | WendyMason |
| Documentation Lists and Handy Links This is a list of all pages that assist with keeping track of user documentation in the Software Web. UnderWorldContents Grouped ... | ||
| DocumentationMonitor | 18 Oct 2007 - 04:01 - r6 | WendyMason |
| Documentation Monitor This page aims to provide a mechanism with which to monitor the age of documentation pages, in order to determine whether pages require updating ... | ||
| DocumentationPublishForm | 13 Aug 2008 - 04:36 - r17 | WendyMason |
| Customised Form to Publish Offline Documentation This form uses the !PublishContrib plugin to generate an offline copy of documentation to accompany an stable release ... | ||
| DocumentationTarballs | 05 Dec 2007 - 03:54 - r6 | WendyMason |
| Documentation Tarballs For each release of , an offline copy of the user documentation pages of the Software web is saved using the PublishContrib extension. Links ... | ||
| ExperimentalToolbox | 01 Aug 2007 - 23:03 - r7 | PatrickSunter |
| The !!Experimental Toolbox What is Experimental ? The "Experimental" Toolbox is the name of the repository of work in progress algorithms modelling features created ... | ||
| FlattenYourXmlFile | 05 Jul 2007 - 04:22 - r2 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| GLucifer | 26 Jun 2008 - 04:19 - r11 | KathleenHumble |
| What is ? is a general visualization framework which can be used by StGermain, , and almost any grid based computational models. is a visual analysis toolkit that ... | ||
| GLuciferFAQ | 26 Jun 2008 - 04:21 - r12 | KathleenHumble |
| Frequently Asked Questions What is ? is a flexible and extensible parallel code which visualises data from any StGermain based code as it is generated. It is written ... | ||
| GLuciferModules | 02 Jul 2007 - 08:16 - r8 | WendyMason |
| Next Generation Visualisation Framework is a flexible and extensible parallel code which visualises data from any StGermain based code as it is generated. It is broken ... | ||
| GettingUnderworldLite | 23 May 2007 - 06:41 - r4 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| IncludedTopics | 01 Nov 2007 - 03:07 - r7 | WendyMason |
| Topics Included in Other Topics in the Software Web The contents of the following two lists should match. All topics which feature the text string "STARTINCLUDE" ... | ||
| Index | 23 Apr 2008 - 06:09 - r5 | WendyMason |
| About is a StGermain based parallel modelling framework Geoscience research code, which utilises a Lagrangian particle in cell finite element scheme (the prototype ... | ||
| LinkingExperimentalAgainstUnderworldManual | 02 Aug 2007 - 00:13 - r20 | PatrickSunter |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| LinkingExperimentalAgainstUnderworldModule | 23 Apr 2008 - 04:22 - r9 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| LocalPCExperimentalToolbox | 01 Aug 2007 - 23:47 - r4 | PatrickSunter |
| Using the ExperimentalToolbox on your local PC Note that because the Expiremental Toolbox is not part of the main stgUnderworld framework or releases, you'll need ... | ||
| LucBase | 26 Jun 2008 - 04:23 - r5 | KathleenHumble |
| lucBase Sets up basic class structures which are used by the rest of . This contains the following objects. Click on each heading to go to the corresponding entry ... | ||
| LucDrawingObjects | 26 Jun 2008 - 03:08 - r7 | KathleenHumble |
| Drawing Objects Contains implementations of the lucDrawingObject class which provide ways to visualise particular sets of data in specific ways. Click on each heading ... | ||
| LucInputFormats | 26 Jun 2008 - 03:54 - r4 | WendyMason |
| Input Formats Contains implementations of the lucInputFormat class which reads in an image file to be used by something else in the code (see /gLucifer.html#lucInputFormat ... | ||
| LucOutputFormats | 02 Jul 2007 - 07:42 - r3 | WendyMason |
| Output Formats Contains implementations of the lucOutputFormat class which gives different formats (static and movies) to output images. WendyMason 02 Jul 2007 ... | ||
| LucRenderingEngines | 26 Jun 2008 - 04:03 - r5 | KathleenHumble |
| Rendering Engines Contains implementations of the lucRenderingEngine class (see lucRenderingEngine entry in Component Codex). lucRenderingEngineGL An implementation ... | ||
| LucWindowInteractions | 02 Jul 2007 - 08:36 - r4 | WendyMason |
| Window Interactions Contains implementations of the lucWindowInteraction class which provides ways for the user to interact with the images. WendyMason 02 Jul ... | ||
| LucWindowing | 26 Jun 2008 - 03:11 - r5 | KathleenHumble |
| lucWindowing Module Contains implementations of the lucWindow class (see entry in Component Codex) which are used to create different types of windows for different ... | ||
| MultigridDecompositionGuide | 16 May 2007 - 10:32 - NEW | PatrickSunter |
| Multigrid Decomposition See VPAC:Stgermain.MultigridParallelDecompositionGuide. | ||
| PublishContribHistory | 24 Apr 2008 - 01:53 - r114 | WendyMason |
| Last Published Publisher WendyMason Date 24 Apr 2008 01:51 {PublishContrib}{Dir} /Library/WebServer/twiki/pub/publish/ {PublishContrib}{URL} /twiki/pub/publish ... | ||
| SiteMap | 13 Aug 2008 - 04:36 - r13 | WendyMason |
| and User Documentation SiteMaps This is a site map of all user documentation on this Wiki pertaining to and . See also Component Codex #UnderworldSiteMap ... | ||
| StGermain | 23 Apr 2008 - 08:08 - r2 | WendyMason |
| StGermain The !StGermain project aims to provision the development of computational codes through building blocks of mathematical and physics concepts. The software ... | ||
| StableBuildCustomPlugins | 21 Nov 2007 - 05:58 - r7 | WendyMason |
| #RunCustomPlugins Using your own Plugins and Xml models. This requires a lot more know how to get this working. At a minimum you will need: Primary Page maintainers ... | ||
| StableBuildCustomXML | 24 May 2007 - 04:39 - r5 | PatrickSunter |
| #RunCustomXml Using your own custom XML Models with an installed Stable Build If you have multiple xml's that you have modified, it is recommended that you checkout ... | ||
| StableBuildExperimentalToolbox | 25 Oct 2007 - 06:53 - r14 | WendyMason |
| #RunExperimentalToolbox Using the ExperimentalToolbox repository with a Stable Build on Cluster Computers If you wish to use an ExperimentalToolbox plugin, you will ... | ||
| StableBuildOptions | 23 Apr 2008 - 08:09 - r16 | WendyMason |
| Using an Stable Build on a supported supercomputer If you wish to run models on an Australian supercomputer, it's recommended to use the latest Stable Build pre ... | ||
| StableBuildStandardXML | 02 May 2007 - 06:26 - r4 | WendyMason |
| #RunStandardXml Running Standard xml models only. This option can be used if you only have one modified xml and it uses the unmodifed Standard xmls. Otherwise, ... | ||
| UnderWorld | 29 Jul 2008 - 08:41 - r71 | WendyMason |
| is a StGermain parallel modelling framework Geoscience research code, which utilises a Lagrangian particle in cell finite element scheme (the prototype of which is ... | ||
| UnderWorldBuoyancyForceTerms | 26 Jun 2008 - 03:09 - r9 | WendyMason |
| Buoyancy Force Terms in There are three buoyancy force terms that can be used in . They are all children of the ForceTerm component. These are often already specified ... | ||
| UnderWorldConfigurationConditionsCluster | 22 Nov 2007 - 05:51 - r6 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderWorldMercurialDownload | 16 Jul 2008 - 01:30 - r7 | WendyMason |
| Downloading and Installing Mercurial Why Mercurial? It is intended to switch from Subversion as 's version control system to another system called Mercurial. We finally ... | ||
| UnderWorldMesh | 19 Oct 2007 - 06:26 - r4 | WendyMason |
| Mesh Information Non moving vs. moving mesh The template !InputFiles for thermal, thermochemical and chemical (including subduction) convection use a non moving mesh ... | ||
| UnderWorldModellingChecklist | 06 Dec 2007 - 05:59 - r3 | WendyMason |
| Modelling Checklist This checklist outlines the major steps necessary to run an model. On a Cluster 1 see StableBuildOptions 1 choose a model template, create ... | ||
| UnderWorldNotesEnvVariablesEdit | 23 May 2007 - 06:43 - r3 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderWorldNotesMPD | 23 May 2007 - 06:44 - r3 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderWorldOnGrid | 04 Jun 2008 - 05:38 - r22 | WendyMason |
| Using on the ARCS Grid The grid provides a new way to submit jobs to supported computer clusters. The following steps will guide you through getting started on the ... | ||
| UnderWorldParallelProfiling | 13 Mar 2008 - 05:08 - NEW | WendyMason |
| Parallel Profiling in What is Parallel Profiling? How do I use Parallel Profiling? MirkoVelic 13 Mar 2008 WendyMason 13 Mar 2008 | ||
| UnderWorldVisualisationControls | 06 Dec 2007 - 06:13 - r2 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderWorldWebMap | 13 Aug 2008 - 14:52 - r14 | TWikiGuest |
| Web Maps This is under contruction. There is a problem with the DirectedGraphWebMapPlugin and / or DirectedGraphPlugin which this relies on. WendyMason 03 Oct ... | ||
| UnderWorldYielding | 26 Jun 2008 - 03:20 - r8 | KathleenHumble |
| Yielding Yield stress can be calculated according to the following models, where: where %$\tau 0$% is the cohesion term, %$\mu$% is the friction coefficient term, ... | ||
| UnderworldBoundaryExtension | 18 Jul 2007 - 04:54 - r7 | WendyMason |
| Extension Boundary Condition What is the Extension Boundary Condition? The extension boundary condition is free slip with velocity conditions applied to the left ... | ||
| UnderworldBoundaryFreeSlip | 17 Aug 2007 - 02:16 - r15 | WendyMason |
| Free slip Boundary Condition What is the Free slip Boundary Condition? The free slip boundary condition applies a zero condition perpendicular to the box wall, which ... | ||
| UnderworldBoundaryFreeSlipSides | 18 Jul 2007 - 04:56 - r4 | WendyMason |
| Free slip sides Boundary Condition What is the Free slip sides Boundary Condition? The free slip sides boundary condition is the same as the Free slip Boundary Condition ... | ||
| UnderworldBoundaryNoSlip | 18 Jul 2007 - 04:58 - r11 | WendyMason |
| No Slip Boundary Condition What is the No Slip Boundary Condition? The no slip boundary condition has a zero velocity in all directions on all walls. How is this ... | ||
| UnderworldBoundaryTemperature | 17 Aug 2007 - 02:17 - r6 | WendyMason |
| Temperature Boundary Condition What is the Temperature Boundary Condition? The temperature boundary condition applies a temperature of 0 (zero) to the top, and 1 ... | ||
| UnderworldCheckpointing | 21 Nov 2007 - 04:33 - r5 | WendyMason |
| Checkpointing in What is Checkpointing? Checkpointing facilitates the relaunching of a model from a point nominated by the user that was reached on a previous run ... | ||
| UnderworldCluster | 03 Apr 2008 - 02:58 - r23 | WendyMason |
| Underworld Community Computer Cluster Tips Note for getting the code working on the APAC AC in 2008, see UnderworldClusterAPAC . This page provides a range of tips ... | ||
| UnderworldClusterAPAC | 23 Jan 2008 - 05:34 - r2 | PatrickSunter |
| Guide to running Underworld on the APAC Cluster PatrickSunter 23 Jan 2008 Modules to load initially (eg in your bashrc) module load snark # This 2nd one should ... | ||
| UnderworldClusterAdvancedConfig | 01 Nov 2007 - 04:38 - r6 | WendyMason |
| Advanced Computer Configuration Tips Other Module Commands A short list of commands you can use to find out about modules loaded on a cluster is available at http ... | ||
| UnderworldClusterEnvVariables | 12 Oct 2007 - 07:39 - r7 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldClusterPerformance | 16 May 2007 - 10:28 - r9 | PatrickSunter |
| Performance on Computer Clusters Disclaimer these results were generated with a codebase from Q1 Q2 2006, and we no longer vouch for their accuracy. . PatrickSunter ... | ||
| UnderworldClusterQueueingSystem | 21 Aug 2008 - 04:22 - r6 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldCodeDevelopment | 29 Jul 2008 - 08:32 - NEW | WendyMason |
| WendyMason 29 Jul 2008 | ||
| UnderworldCompileSCons | 13 Aug 2008 - 06:25 - r2 | WendyMason |
| Compiling With SCons Why SCons and not VMake? SCons must be used to compile copies of checked out on or after 7 Aug 2008. SCons can also be used for some copies ... | ||
| UnderworldCompileVMake | 13 Aug 2008 - 06:37 - r2 | WendyMason |
| Compiling with VMake Which versions of require compiling with VMake? VMake was an alternative to compiling with SCons for copies of checked out prior to 7 Aug ... | ||
| UnderworldComponents | 21 Nov 2007 - 06:17 - NEW | WendyMason |
| Components The kinds of output one can generate using include: What are Components? Components form the major part of an model, and are listed in the Component ... | ||
| UnderworldContents | 13 Aug 2008 - 04:35 - r21 | WendyMason |
| Contents Guide Note for New Users of New users are recommended to start at the Underworld page and follow further links from there, or UnderworldReleases if you ... | ||
| UnderworldDependencies | 13 Aug 2008 - 04:34 - r66 | WendyMason |
| Software Dependencies relies on a suite of software applications. Some of these are essential, while others facilitate particular visualisation capabilities, as outlined ... | ||
| UnderworldDownload | 13 Aug 2008 - 07:09 - r41 | WendyMason |
| Downloading Installing Note: Please refer to the UnderworldReleases page for: information on hardware and operating system requirements level of technical ... | ||
| UnderworldEnvVariables | 18 Apr 2007 - 05:02 - r18 | WendyMason |
| Environment Variables Checklist You probably will not need to consult the list below as the relevant file in the Machines directory should be enough to get you started ... | ||
| UnderworldFAQ | 26 Jun 2008 - 03:11 - r15 | WendyMason |
| Frequently Asked Questions and Links If the topic you are searching for is not listed here, you may like to also refer to https://csd.vpac.org/twiki/bin/view/Stgermain ... | ||
| UnderworldFeedbackComponentCodex | 26 Jun 2008 - 03:14 - r5 | WendyMason |
| Issues with the Component Codex Please list ideas here that you have about the component codex and how it can improve. Link to codex Requests list Todo List ... | ||
| UnderworldFileLocations | 05 Jul 2007 - 02:48 - r3 | WendyMason |
| Software and File Locations If is to be used in a multi user environment , it is recommended that one copy of each software dependency and itself is installed ... | ||
| UnderworldHowToREP | 08 May 2008 - 14:45 - r13 | JulianGiordani |
| REP Recovery by Equilibrium in Patches well !ExperimentalToolbox for now nice work boss..... The REP algorithm was taken from B.Boroomand and O. C. Zienkiewicz, ... | ||
| UnderworldHowToSPR | 18 Jul 2007 - 06:32 - r8 | PatrickSunter |
| SPR well !ExperimentalToolbox for now What is SPR SPR, is a smoothing method which will smooth out a strain rate field. It works by taking points at the center ... | ||
| UnderworldImageLibrariesDownload | 06 Dec 2007 - 06:00 - r13 | WendyMason |
| Image Graphics Libraries Download and Installation What do these programs do? Graphics libraries are required to enable , which downloads with your copy of , to save ... | ||
| UnderworldInitialAnalytic | 18 Jul 2007 - 05:03 - r10 | WendyMason |
| Analytic Initial Condition Equations Taken from Appendix A of P.E. van Keken et al. A comparison of methods for the modelling of thermochemical convection . Journal ... | ||
| UnderworldInitialSinusoidal | 18 Jul 2007 - 05:04 - r10 | WendyMason |
| Sinusoidal Perturbation Initial Condition What is the Sinusoidal Perturbation Initial Condition? This is a perturbation needed to begin convection. Equations In ... | ||
| UnderworldInitialWhiteNoise | 18 Jul 2007 - 06:32 - r4 | PatrickSunter |
| White Noise Initial Condition Note: This page is under development. TODO: Move the whiteNoise plugin from Experimental to normal underworld, it seems fine to use ... | ||
| UnderworldInputAnisotropic | 18 Jul 2007 - 02:58 - r11 | WendyMason |
| Anisotropic Model Rheology Isotropic and anisotropic. See H. B. Mühlhaus, M. Cada, and L. Moresi. Anisotropic convection model for the earth's mantle. Computational ... | ||
| UnderworldInputArrhenius | 18 Jul 2007 - 01:41 - r13 | WendyMason |
| Arrhenius Model Rheology Arrhenius Thermal Convection Equations Go back to Thermal Convection Models in Base Application (!BaseApp) !ThermalConvection.xml ... | ||
| UnderworldInputDepthDependentViscosity | 26 Jun 2008 - 03:41 - r7 | WendyMason |
| Depth Dependent Viscosity Model This model includes a rheology that varies viscosity exponentially in a given spatial direction (depth). The model is based on our ... | ||
| UnderworldInputExtension | 18 Jul 2007 - 04:41 - r10 | WendyMason |
| Extension Model A high viscosity bar shaped region is placed in a low viscosity box, and yields according to the VonMises model. A weak zone is located approximately ... | ||
| UnderworldInputExtensionDP | 18 Jul 2007 - 04:41 - r5 | WendyMason |
| ExtensionDP Model A high viscosity bar shaped region is placed in a low viscosity box, and yields according to the Drucker Prager model. A weak zone is located approximately ... | ||
| UnderworldInputExtensionFMM | 18 Jul 2007 - 04:42 - r7 | WendyMason |
| FaultingMoresiMuhlhaus2006 2D Extension Model This model simulates the yielding of the Earth's crust in two dimensions based on to the Mohr Coulomb criterion, according ... | ||
| UnderworldInputExtensionFMM3D | 18 Jul 2007 - 04:43 - r10 | WendyMason |
| FaultingMoresiMuhlhaus2006 3D Extension Model This model simulates the yielding of the Earth's crust in three dimensions based on to the Mohr Coulomb criterion, according ... | ||
| UnderworldInputFiles | 06 Mar 2008 - 08:40 - r49 | WendyMason |
| Input / Model Files What are !InputFiles? !InputFiles are xml files, in which you can call upon other files, and in which you can define parameters to create your ... | ||
| UnderworldInputFrankKamenetskii | 18 Jul 2007 - 02:55 - r10 | WendyMason |
| !FrankKamenetskii Model Rheology FrankKamenetskii Thermal Convection Equations Go back to Thermal Convection Models in Base Application (!BaseApp) !ThermalConvection ... | ||
| UnderworldInputInternalHeating | 26 Jun 2008 - 03:43 - r10 | WendyMason |
| !InternalHeating Model Rheology FrankKamenetskii Thermal Convection Equations, Boundary Conditions and Initial Conditions Go back to Thermal Convection Models ... | ||
| UnderworldInputMobileLid | 18 Jul 2007 - 03:59 - r9 | WendyMason |
| !MobileLid Model Rheology viscosity FrankKamenetskii yielding Byerlee Thermal Convection Equations Go back to Thermal Convection Models in Base ... | ||
| UnderworldInputMultiComponent | 18 Jul 2007 - 02:57 - r12 | WendyMason |
| !Multi Component Model This model is based on the Non Newtonian model with two rheologies (instead of one). Rheology FrankKamenetskii Non Newtonian For further information ... | ||
| UnderworldInputMultiThermalDiffusivity | 31 Aug 2007 - 05:40 - r6 | WendyMason |
| Multi Thermal Diffusivity Model This is a test xml for Multiple Material Thermal Diffusivity parameter. It uses the plugin Underworld MaterialThermalDiffusivity to ... | ||
| UnderworldInputNonNewtonian | 18 Jul 2007 - 02:56 - r11 | WendyMason |
| !Non Newtonian Model Rheology FrankKamenetskii Non Newtonian Thermal Convection Equations Go back to Thermal Convection Models in Base Application (!BaseApp ... | ||
| UnderworldInputRayleighTaylorBenchmark | 23 Aug 2007 - 06:05 - r19 | WendyMason |
| RayleighTaylorBenchmark Model Rayleigh Taylor convection benchmark as detailed in P.E. van Keken et al. A comparison of methods for the modelling of thermochemical ... | ||
| UnderworldInputSlabSubduction | 26 Jun 2008 - 03:45 - r17 | WendyMason |
| SlabSubduction Model The template !SlabSubduction model is a chemical convection model simulating a falling lithospheric slab. It consists of a dense lithospheric ... | ||
| UnderworldInputThermoChemBenchmark | 12 Sep 2007 - 07:47 - r16 | WendyMason |
| ThermoChemBenchmark Model A dense layer is placed at the bottom of the box. Thermochemical convection benchmark as detailed in P.E. van Keken et al. A comparison ... | ||
| UnderworldJournalling | 06 Mar 2008 - 06:26 - r9 | WendyMason |
| Journalling in What is Journalling? Journalling can provide different levels of information about how your model is progressing. In the case of a desktop machine ... | ||
| UnderworldLapackBlasDownload | 10 Sep 2007 - 06:17 - r7 | WendyMason |
| Downloading and Installing LAPACK and BLAS What are LAPACK and Blas? LAPACK (http://www.netlib.org/lapack) and BLAS (http://www.netlib.org/blas) are packages that ... | ||
| UnderworldLibAvcodec | 03 Apr 2008 - 03:34 - r11 | WendyMason |
| Downloading and Installing libavcodec What is libavcodec? requires a movie graphics library such as libavcodec in order to export image outputs to an mpeg file ... | ||
| UnderworldLibTiffDownload | 03 Apr 2008 - 03:35 - r11 | WendyMason |
| Downloading and Installing libtiff What is libtiff and do I need to install it? libtiff is used by for image output in tiff format and should come already installed ... | ||
| UnderworldLibfameDownload | 03 Apr 2008 - 03:36 - r22 | WendyMason |
| Downloading and Installing libfame What is libfame? requires a movie graphics library such as libfame in order to export image outputs to an mpeg file (please return ... | ||
| UnderworldLibjpegDownload | 03 Apr 2008 - 03:36 - r10 | WendyMason |
| Downloading and Installing libjpeg What is libjpeg and do I need to install it? libjpeg is used by for image output in jpeg format. Mac users can download and ... | ||
| UnderworldLibpngDownload | 03 Apr 2008 - 04:10 - r14 | WendyMason |
| Downloading and Installing libpng What is libpng and do I need to install it? libpng is used by and is the default image output format. Linux and Unix usually ... | ||
| UnderworldMUMPSDownload | 22 Mar 2006 - 06:47 - r5 | WendyMason |
| Downloading and Installing MUMPS What is MUMPS? MUMPS stands for "MUltifrontal Massively Parallel sparse direct Solver" (http://www.enseeiht.fr/lima/apo/MUMPS/). ... | ||
| UnderworldMayhemsREP | 18 Jul 2007 - 06:32 - r4 | PatrickSunter |
| Recovery Methods for Finite Element Based Schemes well !ExperimentalToolbox for now Concerning the implementaion of REP (Recovery by Equilibrium of Patches) Recover ... | ||
| UnderworldModels | 14 Oct 2007 - 23:23 - r27 | DavidLee? |
| Creating and Running Models in Some Geophysical Systems which can be Modelled using The !InputFiles directory contains a series of !InputFiles that you can use ... | ||
| UnderworldModelsConvectionChemical | 18 Jul 2007 - 02:51 - r11 | WendyMason |
| Chemical Convection Models in What Kind of Chemical Convection Systems can be Modelled using ? The following chemical convection systems can be modelled using : ... | ||
| UnderworldModelsConvectionThermal | 26 Jun 2008 - 03:48 - r18 | WendyMason |
| Thermal Convection Models in What Kind of Thermal Convection Systems can be Modelled using ? The following thermal convection systems can be modelled using : Temperature ... | ||
| UnderworldModelsConvectionThermoChemical | 26 Jun 2008 - 03:52 - r16 | WendyMason |
| Thermochemical Convection Models in What Kind of Thermochemical Convection Systems can be Modelled using ? The following thermochemical convection systems can be ... | ||
| UnderworldModelsExtension | 18 Jul 2007 - 02:52 - r9 | WendyMason |
| Extension Modelling Using What Kind of Extension Systems can be Modelled using ? The following extension systems can be modelled using : Von Mises Extension ... | ||
| UnderworldModuleLoadOnCluster | 23 Apr 2008 - 08:14 - r21 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldMovieLibrariesDownload | 10 Sep 2007 - 06:22 - r5 | WendyMason |
| Movie Graphics Library Download and Installation What do these programs do? Once , which downloads with , has saved rendered images in a chosen format (see Image ... | ||
| UnderworldMovingMesh | 28 Nov 2007 - 04:56 - r7 | WendyMason |
| Using a Moving Mesh in Models A moving mesh needs to be used when the size of the box changes as the model evolves i.e. the boundary conditions prescribe that one ... | ||
| UnderworldMpiDownload | 28 Feb 2007 - 06:43 - r11 | WendyMason |
| MPI Implementation Setup What is an MPI implementation and do I need to install one? !StGermain based codes such as require an implementation of the MPI 1 standard ... | ||
| UnderworldMpich2 | 03 Apr 2008 - 03:37 - r16 | WendyMason |
| Compiling and Setting up MPICH 2 Configuring MPICH 2 Navigate into the unzipped directory, and type one of the following to create the makefiles for the build you ... | ||
| UnderworldMpichDownload | 24 Jan 2007 - 07:13 - r18 | WendyMason |
| MPICH Download and Installation What is MPICH and do I need to install it? !StGermain based codes such as require an implementation of the MPI 1 or MPI 2 standard ... | ||
| UnderworldMpichLinuxShmem | 03 Apr 2008 - 03:39 - r14 | WendyMason |
| Compiling and Setting up MPICH 1 on Linux using Shared Memory (shmem) There are two ways (for most systems) to facilitate the communications in mpich 1: via a network ... | ||
| UnderworldMpichLinuxSsh | 03 Apr 2008 - 03:40 - r21 | WendyMason |
| Compiling and Setting up MPICH 1 on Linux using a Network Socket (ssh) There are two ways (for most systems) to facilitate the communications in mpich 1: via a network ... | ||
| UnderworldMpichMacSsh | 03 Apr 2008 - 03:41 - r21 | WendyMason |
| Compiling and Setting up MPICH 1 on a Mac using a Network Socket (ssh) There are two ways (for most systems) to facilitate the communications in mpich 1: via a network ... | ||
| UnderworldNotesClusterEnvVariables | 12 Jul 2007 - 08:06 - r8 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldNotesCodeDevelopment | 29 Jul 2008 - 08:33 - NEW | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldNotesUpdatesChanges | 23 May 2007 - 06:49 - r4 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldNotesUpdatesEnvVariables | 23 May 2007 - 06:49 - r4 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldOSMesaDownload | 10 Sep 2007 - 06:29 - r9 | WendyMason |
| OSMesa Download and Installation What is OSMesa and which version of OSMesa can I use? OSMesa is a software implementation of !OpenGL, which is portable, and doesn ... | ||
| UnderworldOSX64Bit | 26 Sep 2006 - 00:06 - NEW | DavidMay |
| Getting running on your G5 in 64 bit. Sushi is a 64 bit, dual core, G5 with approximately 8Gb of RAM. To address the entire 8Gb of memory, your code must be explicitly ... | ||
| UnderworldOpenMPIDownload | 03 Apr 2008 - 03:41 - r13 | WendyMason |
| OpenMPI Download and Installation Downloading and Installing !OpenMPI These instructions apply to any Linux, Unix or Mac operating system. Note: For copies of ... | ||
| UnderworldOutput | 27 Mar 2008 - 08:30 - r21 | WendyMason |
| Output The kinds of output one can generate using include: Journalling Journalling can provide different levels of information about how your model is progressing ... | ||
| UnderworldOutputImagesAndMovies | 12 Jul 2007 - 08:10 - r3 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldPassiveTracers | 05 Sep 2008 - 08:16 - r15 | WendyMason |
| Passive Tracers in What are Passive Tracers? Passive tracers (passiveTracers) are particles that can be added to a model which move passively within the domain without ... | ||
| UnderworldPetsc1 | 01 Jul 2008 - 07:58 - r6 | WendyMason |
| Compiling versions of PETSc up to 2.3.1 On macs, PETSc 2.3.1 should only be used with copies of downloaded or updated prior to 17 Jan 2007. On linux, copies of downloaded ... | ||
| UnderworldPetsc2 | 01 Jul 2008 - 04:38 - r19 | WendyMason |
| Compiling PETSc 2.3.2 and above The following instructions detail how to compile the latest version of PETSc (e.g. 2.3.3), set up environment variables and add the ... | ||
| UnderworldPetscDownload | 01 Jul 2008 - 04:45 - r32 | WendyMason |
| PETSc Download and Installation What is PETSc? PETSc is a set of libraries, including equation solvers and assembly routines, which is used by . It is a toolkit, ... | ||
| UnderworldPluginsProject | 21 Nov 2007 - 05:58 - r3 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldPythonDownload | 16 Jul 2008 - 02:13 - r8 | WendyMason |
| Python Download and Installation Why do I need Python and how do I know if I already have it installed? Python is needed to compile Petsc, and for some optional components ... | ||
| UnderworldRecoveryMethods | 07 May 2008 - 00:23 - r8 | JulianGiordani |
| !!Recovery Methods in well !ExperimentalToolbox for now This page was created so members of mcc and vpac ( and others who are interested ) could discuss matters of ... | ||
| UnderworldReleases | 13 Aug 2008 - 06:30 - r45 | WendyMason |
| / Snark Releases Choosing your version of The most recent Underworld/Snark stable release is see below for more information on this stable release. ... | ||
| UnderworldRequirements | 11 Apr 2007 - 06:47 - NEW | WendyMason |
| Hardware and Operating System Requirements Any Linux based operating system including Mac OS X (Power PC macs). has been trialled and found to compile on an ... | ||
| UnderworldResolution | 21 Nov 2007 - 04:56 - r6 | WendyMason |
| Model Resolution To resolve all objects, the grid cell size should be at least the same as the smallest object in each direction. Conversely, the dimensions of an ... | ||
| UnderworldSSHKeys | 30 Jan 2006 - 01:43 - NEW | WendyMason |
| Setting up passwordless SSH keys Passwordless access can be set up for access to machines using an authorization key, for passwordless multi processor simulation on ... | ||
| UnderworldSconsDownload | 13 Aug 2008 - 06:56 - r5 | WendyMason |
| Downloading and Installing Scons Why SCons? SCons (currently beta release) can be used to configure . In the past, VMake has been used for this. Further information ... | ||
| UnderworldSeminars | 06 Aug 2008 - 08:35 - r7 | WendyMason |
| !AuScope Seminars These seminars are aimed to be of interest to the developers core Monash Cluster Computing user group of the AuScope infrastructure being developed ... | ||
| UnderworldSolvers | 24 Apr 2008 - 01:48 - r10 | WendyMason |
| Using Solvers with Uzawa Uzawa is the default solver in . Go back to Creating and Running Models in WendyMason 27 Sep 2007 | ||
| UnderworldSubversionDownload | 03 Apr 2008 - 04:09 - r10 | WendyMason |
| Downloading and Installing Subversion Why Subversion? The Subversion SCM tool is used for updating . We believe it is superior to CVS for several reasons, especially ... | ||
| UnderworldSwarmShapeVC | 15 Oct 2007 - 01:01 - NEW | DavidLee? |
| Swarm Shape VC in What is a Swarm Shape VC? A swarm shape VC (Variable Condition) is a component which allows the user to specify a distribution for a material value ... | ||
| UnderworldSwarmVariableField | 14 Oct 2007 - 01:59 - r2 | DavidLee? |
| Swarm Variable Field in What is a Swarm Variable Field? A swarm variable field is an interface for interpolating a material property stored on the swarm onto the ... | ||
| UnderworldTechnicalKnowledge | 11 Apr 2007 - 06:50 - NEW | WendyMason |
| Level of Technical Knowledge Assumed in Instructions The instructions on this website assume only beginner's level familiarity with the Unix / Linux operating environment ... | ||
| UnderworldTechnicalSupport | 13 Aug 2008 - 06:41 - NEW | WendyMason |
| Technical Support Frequently Asked Questions See FAQS Compiling and Using on a cluster See VPAC and other cluster computers for help with clusters frequently ... | ||
| UnderworldTest | 13 Aug 2008 - 06:27 - r8 | WendyMason |
| Testing your copy of , after compiling with VMake comes with a set of self tests to check that it is working properly, when compiled with VMake. Note for VPAC Computer ... | ||
| UnderworldTextureMapping | 26 Jun 2008 - 03:54 - r4 | WendyMason |
| The text on this page is included in the following pages, hence amendments made to the text below that falls between STARTINCLUDE and STOPINCLUDE will also be amended ... | ||
| UnderworldUpdates | 18 Jul 2007 - 02:28 - r10 | WendyMason |
| Updating Note on modifying files within the It is recommended that you do not modify any of the files within your copy of or its subdirectories , and locate all ... | ||
| UnderworldVTKDownload | 03 Apr 2008 - 03:46 - r11 | WendyMason |
| Downloading and Installing CMake and VTK What are CMake and VTK? draws the image inside window(s) created during interactive visualisation. It requires http://www ... | ||
| UnderworldVariableConditions | 23 Apr 2008 - 08:21 - r6 | WendyMason |
| Variable Conditions This is a list of Variable Conditions that come with , and which ones have Wiki pages written about them so far. This page is more aimed at keeping ... | ||
| UnderworldViscosityArrhenius | 22 Mar 2006 - 07:52 - r4 | WendyMason |
| Arrhenius Viscosity Law The temperature dependence of viscosity is modelled using the dimensionless equation: %$\eta \eta 0 \exp \left( \frac {E V d} {T T 0 ... | ||
| UnderworldViscosityFrankKamenetskii | 22 Mar 2006 - 07:53 - r5 | WendyMason |
| !FrankKamenetskii Viscosity Law The temperature dependence of viscosity is modelled using the equation: %$\eta \eta 0 \exp\left( \theta T\right)$% Where %$\eta ... | ||
| UnderworldViscosityNonNewtonian | 23 May 2007 - 07:18 - r4 | WendyMason |
| Non Newtonian Viscosity For Non Newtonian fluids, the viscosity is stress dependent and is calculated according to the equation: %$\eta \eta {0} \tau^{1 n}$% where ... | ||
| UnderworldVisualisation | 26 Jun 2008 - 03:16 - r11 | WendyMason |
| Visualisation How Can Models be Visualised? The visualisation of models in is enabled by , which provides a set of functions and component to display the objects ... | ||
| UnderworldWarnings | 13 Aug 2008 - 06:28 - r14 | WendyMason |
| Possible Warnings When Compiling with VMake The following warnings or errors may occur during configuration of (before make), when compiling with VMake. If you experience ... | ||
| WebChanges | 16 Aug 2001 - 19:58 - NEW | PeterThoeny |
| WebHome | 17 Aug 2008 - 04:33 - r42 | TWikiGuest |
| Software at ( homepage information on latest releases, capabilities of the code, install instructions, etc. ) is a parallel modelling framework Geoscience research ... | ||
| WebIndex | 24 Nov 2001 - 11:41 - r2 | PeterThoeny |
| See also the faster WebTopicList | ||
| WebLeftBar | 16 Aug 2004 - 05:52 - NEW | ArthurClemens? |
| Web Web Home Changes Index Search MC2 Site Navigation | ||
| WebNotify | 05 Sep 2006 - 05:10 - r8 | JulianGiordani |
| This is a subscription service to be automatically notified by e mail when topics change in this Software web. This is a convenient service, so you do not have to ... | ||
| WebPreferences | 23 Apr 2008 - 04:54 - r16 | JohnSpencer |
| Software Web Preferences The following settings are web preferences of the Software web. These preferences overwrite the site level preferences in ., and can ... | ||
| WebRss | 16 Aug 2004 - 03:27 - r2 | PeterThoeny |
| Wiki Cluster's Software web /view/Software The Software web of TWiki. TWiki is a Web Based Collaboration Platform for the Corporate World. | ||
| WebSearch | 08 Aug 2001 - 05:26 - NEW | PeterThoeny |
| WebSearchAdvanced | 18 Jan 2004 - 10:52 - NEW | PeterThoeny |
| WebStatistics | 03 Sep 2008 - 20:57 - r656 | TWikiGuest |
| Statistics for Software Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and ... | ||
| WebTopicList | 24 Nov 2001 - 11:40 - NEW | PeterThoeny |
| See also the verbose WebIndex. | ||